PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032525.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 396aa    MW: 44500.7 Da    PI: 5.866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032525.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-50141561128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                  + pGfrFhPtdeelv +yLk+k +++ l++ e ik+vdiyk++PwdLp+                ++++ekewyf+++rd+ky++++r+nr+t +g+W
  Pbr032525.1  14 MLPGFRFHPTDEELVGFYLKRKFQQRVLPI-ELIKQVDIYKYDPWDLPTtvtelvscissvqaeLASTGEKEWYFYCPRDRKYKNSTRPNRVTGAGFW 110
                  579***************************.89***************55899999998777654445899*************************** PP

          NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  katg+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Pbr032525.1 111 KATGTDRPIYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 156
                  ***********956677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5313187IPR003441NAC domain
PROSITE profilePS5100554.97514187IPR003441NAC domain
PfamPF023658.9E-2516156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEQKNEMEKV DDVMLPGFRF HPTDEELVGF YLKRKFQQRV LPIELIKQVD IYKYDPWDLP  60
TTVTELVSCI SSVQAELAST GEKEWYFYCP RDRKYKNSTR PNRVTGAGFW KATGTDRPIY  120
SSEGSKCIGL KKSLVFYRGR AAKGIKTDWM MHEFRLPSLS NSVPPKKLLD KSLPANDSWA  180
ICRIFKKTNS MAQRALSHSW DSQFPEPTAA GLFTQQFSSE DMSCTTDMGS TMQFWNNNDL  240
QQASNTNYSS FDTLPYKPIN PTVSKPSMFD GEFPNSFMFS PAELSGTMNP ALIDDLSNPA  300
GSIDFDGSQQ QFTGFSISLQ QQDQMQGNTG TSENEGGFRK NMSSSSNSTS QWGSSSIRSI  360
GFPFSLASDD ESWKPTLPSY SPPYPSSYST NKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-511619017171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341008.10.0PREDICTED: protein FEZ
SwissprotQ9FIW59e-98NAC94_ARATH; Putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-96FEZ_ARATH; Protein FEZ
TrEMBLD9ZJ980.0D9ZJ98_MALDO; NAC domain class transcription factor
STRINGPOPTR_0004s12850.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.19e-99NAC domain containing protein 94